Atom,Belief; Believe refer also to Oneness:

Atom
knowledge, of 34:3
weight, of evil 99:8
weight, of good 4:40, 99:7
unbelievers 34:22

Belief; Believe refer also to Oneness:
Allah knows 4:25
angels 40:7
believers 2:3-4, 2:121, 2:153, 2:172, 2:183, 2:186, 2:218, 3:16, 49:14
brothers, in 9:11
brotherhood, in 59:9, 60:10
challenge 52:36
Day of Judgement 6:158, 30:56, 22:18, 22:56
denial, of 5:5, 7:45
dispute, about 4:59
evil 2:93, 10:33, 49:11, 7:153
examine 3:141
example, of 66:11
guide, in 9:23
guidance, of 4:175, 6:82, 7:203, 42:52, 45:20, 49:17
heart 49:7, 49:14
Everlasting Life 6:113, 17:10
hypocrites, in 3:167, 4:143, 5:41
increase, in 3:173, 33:22, 48:4, 74:31
Jews, see People of the Book 2:41, 2:55, 2:75-76, 2:85, 2:88, 2:91, 2:93, 2:108, 2:135-137, 3:183, 4:150, 4:155-156, 5:41, 6:20, 7:157-158, 16:79
judge 5:50
justice, in 4:135
Nazarenes, see People of the Book 2:82, 2:135-137, 2:257, 2:277, 3:52, 3:179, 4:150 4:171, 4:173, 5:82-85, 6:82, 7:157-158, 10:2, 12:57, 16:97, 18:2, 18:107, 24:55,48:29
patience, in 3:200
People of the Book 3:72-73, 3:110, 4:150, 4:159, 4:171, 5:59, 7:157-158
polytheists 6:148
Prophets 3:81
Prophet Muhammad - 9:60
Prophet Abraham 3:68, 3:84
Prophet David 38:24
Prophet Isaac 3:84
Prophet Ishmael 3:84
Prophet Jacob 3:84
Prophet Jesus 3:52, 3:84, 4:171, 5:110-111
Prophet Jonah 10:98
Prophet Joseph 12:37, 12:57, 12:108
Prophet Moses 3:84, 7:121-126, 10:78, 11:17, 26:24
Prophet Noah 10:74-75, 11:36, 23:26
Prophet Salih 11:62, 7:75-76
recant 3:177, 4:137, 7:89, 9:66, 16:106
reward, for 2:25-26, 10:9, 52:21
striving, to 9:88, 49:15
strong belief 8:2, 9:124, 45:4, 49:15, 22:55
supplication 3:193
unbelievers 2:6, 2:8-9, 2:13-14, 2:26, 2:100, 2:165, 2:212, 4:38, 4:51, 4:60, 4:136, 4:150, 5:41, 6:25, 6:110, 6:124, 12:106, 16:22, 21:30, 26:201, 27:4, 34:8, 34:31, 40:10, 40:85
warning 2:208, 2:254, 2:264, 2:267, 3:100, 3:102, 3:118-119, 3:130, 3:149, 3:156, 4:94, 4:144, 5:2, 6:48, 16:60, 57:28

Birds
crow 5:31
flight, of 105:3
hoopoe 27:20
hunting 5:4
nations, of 6:38
prayers, of 24:41
Prophet Abraham, and 2:60
Prophet David, and 21:80, 34:10, 38:19
Prophet Jesus, and 3:49, 5:110
Prophet Joseph, vision 12:36-41
Prophet Solomon, story 27:16-44
quail 2:57, 7:160, 20:80

Charity; Alms Giving
amount, of 2:219
believers 3:16-17, 32:15-16, 35:32
command to give 16:90
covenant with Allah 9:75
Day of Judgement 2:254
death, before 63:10
debt, release of 2:280
manners in giving 2:262-264, 2:271, 22:36
pilgrimage, during 2:196
Prophet Isaac 21:73-74
Prophet Ishmael 19:55
Prophet Jacob 21:73-74
Prophet Jesus 19:31
promotion, of 4:114
purification, as 9:103
recipients, of 2:215, 2:271, 2:273, 9:60
repentance, by 9:104
reward, for 2:272, 2:274, 3:92, 3:133-34, 4:162, 12:88, 30:39, 57:7, 57:18
spending, for show 4:38
unbelievers, of 3:117, 4:38, 41:7

Nazarenes, People of the Book (Torah or Gospel), also see Prophet Jesus
fancies, of 2:111
claim, of 5:18
covenant, with 5:14
Day of Judgement 2:113, 22:18
death, before 4:159
dialog, with 29:46
guidance 2:120
invitation, to 3:64, 5:15
Messiah, and 9:30
monasticism, 57:27
nearest, to Muslims 5:82
Paradise 2:111
Prophets
Prophet Abraham 2:135, 2:140, 3:67, 3:65
Prophet Isaac 2:140
Prophet Ishmael 2:140
Prophet Jacob 2:140
guardians, of 5:51
question, to 3:70-71, 3:98
some, of the 3:199
trustworthy, some 3:75
warning 2:109, 3:20, 3:79, 4:171, 5:77, 98:1, 98:6

Conservation; Waste
brothers, of devils 17:27
command, not to 26:151

Creation of the Universe
atom's weight, 34:22
challenge 23:86
command 6:14
contemplation, upon 3:190, 7:185
creation, of earth and heavens 2:29, 6:73, 7:54, 9:36, 10:3, 11:7, 13:2, 15:85, 21:30, 25:59, 32:4, 38:27, 41:12, 42:11, 50:38, 64:3, 65:12, 67:3, 71:15
Day of Judgement 7:187, 14:48, 39:67, 39:68, 45:27
heavens, seven 2:29, 17:44, 65:12, 67:3, 71:15
knowledge, of 2:284, 3:29, 5:97, 6:3
obedient, to Allah 2:116, 3:83
ownership, of 2:107, 2:117, 2:164, 2:255, 2:284, 3:109, 3:129, 4:171, 5:17-18, 5:40, 6:101, 7:158, 10:68, 85:9
Prophet Abraham 6:75
prostration, of 13:15, 16:49, 22:19
signs, of 3:190, 7:187, 10:101, 12:105, 14:32, 30:24
Throne/Seat 2:555, 11:7, 23:86, 43:82
unbelievers 14:2, 17:19, 21:30, 29:61, 38:10
unseen, of 16:77